If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ), 'gf_id' => 'HOM05D000940', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000940' ), 'data_identifier' => 'HOM05D000940', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000940', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '643', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p33400' => 'bna', 'A05p43630' => 'bna', 'A06p10420' => 'bna', 'A06p37510' => 'bna', 'A06p43490' => 'bna', 'A08p12340' => 'bna', 'A09p08230' => 'bna', 'A10p24260' => 'bna', 'Aa31LG11G15000' => 'aar', 'Aa31LG1G18620' => 'aar', 'Aa31LG1G660' => 'aar', 'Aa31LG2G7490' => 'aar', 'Aa31LG5G14270' => 'aar', 'Actinidia03931' => 'ach', 'Actinidia05922' => 'ach', 'Actinidia15834' => 'ach', 'Actinidia18368' => 'ach', 'Actinidia25591' => 'ach', 'Actinidia26589' => 'ach', 'Actinidia26590' => 'ach', 'Actinidia31189' => 'ach', 'Actinidia36182' => 'ach', 'Actinidia37808' => 'ach', 'Ah.02g131330' => 'amhyb', 'Ah.04g162650' => 'amhyb', 'Ah.11g044860' => 'amhyb', 'AL1G26280' => 'aly', 'AL1G49300' => 'aly', 'AL3G13580' => 'aly', 'AL5G11990' => 'aly', 'AL6G24880' => 'aly', 'AL8G40470' => 'aly', 'Aqoxy1G00529' => 'aox', 'Aqoxy3G00720' => 'aox', 'Aqoxy3G01482' => 'aox', 'Aqoxy3G03309' => 'aox', 'Aqoxy5G03449' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G4IZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1F46YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24MCIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4T4T3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58XCKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63DUVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M10FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QIA1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGZ4TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB21C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1PKKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBE51F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDP4P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV5TSY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1FE81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8XW04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF0DTM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAGS40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1V611' => 'arhy', 'AT1G14390' => 'ath', 'AT2G02780' => 'ath', 'AT3G03770' => 'ath', 'AT5G14210' => 'ath', 'AT5G63410' => 'ath', 'ATR0686G012' => 'atr', 'ATR0697G301' => 'atr', 'ATR1120G020' => 'atr', 'Atru.chr11.1903' => 'acertr', 'Atru.chr12.1172' => 'acertr', 'Atru.chr12.1180' => 'acertr', 'Atru.chr2.1487' => 'acertr', 'Atru.chr6.2522' => 'acertr', 'Atru.chr9.1088' => 'acertr', 'AUR62005740' => 'cqu', 'AUR62014300' => 'cqu', 'AUR62025917' => 'cqu', 'AUR62028821' => 'cqu', 'AUR62029639' => 'cqu', 'AUR62034093' => 'cqu', 'AUR62038438' => 'cqu', 'AUR62041181' => 'cqu', 'BcaB01g05301' => 'bca', 'BcaB01g05303' => 'bca', 'BcaB01g06339' => 'bca', 'BcaB02g06491' => 'bca', 'BcaB04g19356' => 'bca', 'BcaB04g19915' => 'bca', 'BcaB08g36966' => 'bca', 'BcaC01g04392' => 'bca', 'BcaC04g19053' => 'bca', 'BcaC04g23326' => 'bca', 'BcaC05g24638' => 'bca', 'BcaC05g25341' => 'bca', 'BcaC05g29908' => 'bca', 'BcaC05g30251' => 'bca', 'BcaC06g31217' => 'bca', 'BcaC06g34041' => 'bca', 'BcaNung01797' => 'bca', 'BolC3t16327H' => 'bol', 'BolC5t28957H' => 'bol', 'BolC5t29973H' => 'bol', 'BolC5t34983H' => 'bol', 'BolC6t40222H' => 'bol', 'BolC6t40223H' => 'bol', 'BolC6t40224H' => 'bol', 'BolC7t43847H' => 'bol', 'BolC9t53843H' => 'bol', 'BolC9t59132H' => 'bol', 'BraA03t09980Z' => 'bra', 'BraA03t12517Z' => 'bra', 'BraA05t23101Z' => 'bra', 'BraA06t24222Z' => 'bra', 'BraA06t27234Z' => 'bra', 'BraA08t33223Z' => 'bra', 'BraA09t36474Z' => 'bra', 'BraA10t44491Z' => 'bra', 'C03p40620' => 'bna', 'C04p28680' => 'bna', 'C04p28690' => 'bna', 'C04p28700' => 'bna', 'C05p01790' => 'bna', 'C05p12210' => 'bna', 'C05p63210' => 'bna', 'C06p52000' => 'bna', 'C06p52010' => 'bna', 'C07p33380' => 'bna', 'C09p09300' => 'bna', 'CAN.G1028.1' => 'can', 'CAN.G106.26' => 'can', 'CAN.G128.139' => 'can', 'CAN.G134.58' => 'can', 'CAN.G1491.1' => 'can', 'CAN.G1756.5' => 'can', 'CAN.G279.18' => 'can', 'CAN.G431.6' => 'can', 'CAN.G473.82' => 'can', 'CAN.G783.2' => 'can', 'CAN.G783.3' => 'can', 'CANSAT56G0182' => 'cansat', 'CANSAT56G0710' => 'cansat', 'CANSAT64G1914' => 'cansat', 'CANSAT78G2163' => 'cansat', 'CANSAT80G2268' => 'cansat', 'CARHR014830' => 'chi', 'CARHR077830' => 'chi', 'CARHR145220' => 'chi', 'CARHR199130' => 'chi', 'CARHR254890' => 'chi', 'CARHR277240' => 'chi', 'Carub.0001s1409' => 'cru', 'Carub.0003s0293' => 'cru', 'Carub.0005s0169' => 'cru', 'Carub.0006s1241' => 'cru', 'Carub.0008s2412' => 'cru', 'Ca_04419_v3' => 'car', 'Ca_04751_v3' => 'car', 'Ca_05407_v3' => 'car', 'Ca_08304_v3' => 'car', 'Ca_24134_v3' => 'car', 'Ca_24510_v3' => 'car', 'Ca_25683_v3' => 'car', 'Ca_27150_v3' => 'car', 'Cc02_g32130' => 'ccan', 'Cc06_g17380' => 'ccan', 'Cc07_g00630' => 'ccan', 'Cc08_g07270' => 'ccan', 'CDE02G3358' => 'cde', 'CDE04G2449' => 'cde', 'CDE04G3299' => 'cde', 'CDE07G0458' => 'cde', 'CDE09G0535' => 'cde', 'CDE10G1074' => 'cde', 'Cfa007249' => 'cfa', 'Cfa009016' => 'cfa', 'Cfa010459' => 'cfa', 'Cfa017701' => 'cfa', 'Cfa018846' => 'cfa', 'Ciclev10014356m.g' => 'ccl', 'Ciclev10014358m.g' => 'ccl', 'Ciclev10018927m.g' => 'ccl', 'Ciclev10018967m.g' => 'ccl', 'Ciclev10030797m.g' => 'ccl', 'CiPaw.03G053100' => 'cil', 'CiPaw.04G035000' => 'cil', 'CiPaw.05G138600' => 'cil', 'CiPaw.06G081900' => 'cil', 'CiPaw.09G168500' => 'cil', 'CiPaw.11G009500' => 'cil', 'CiPaw.13G046700' => 'cil', 'ClCG03G003650' => 'cla', 'ClCG04G005510' => 'cla', 'ClCG05G024490' => 'cla', 'ClCG08G008490' => 'cla', 'ClCG11G006980' => 'cla', 'COL.COLO4_06472' => 'col', 'COL.COLO4_08742' => 'col', 'COL.COLO4_23033' => 'col', 'COL.COLO4_28078' => 'col', 'COL.COLO4_28625' => 'col', 'Cpa.g.sc13.146' => 'cpa', 'Cpa.g.sc130.2' => 'cpa', 'Cpa.g.sc161.23' => 'cpa', 'Cpa.g.sc183.21' => 'cpa', 'Cpa.g.sc54.61' => 'cpa', 'CsaV3_1G009530' => 'csa', 'CsaV3_2G034230' => 'csa', 'CsaV3_4G012040' => 'csa', 'CsaV3_5G032460' => 'csa', 'CsaV3_6G004480' => 'csa', 'CSS0002457' => 'camsi', 'CSS0005703' => 'camsi', 'CSS0010614' => 'camsi', 'CSS0020570' => 'camsi', 'CSS0023447' => 'camsi', 'CSS0031593' => 'camsi', 'CSS0045696' => 'camsi', 'DCAR_001107' => 'dca', 'DCAR_009085' => 'dca', 'DCAR_011312' => 'dca', 'DCAR_021769' => 'dca', 'DCAR_021772' => 'dca', 'DCAR_026219' => 'dca', 'DCAR_031046' => 'dca', 'DCAR_031345' => 'dca', 'Dinv04775' => 'din', 'Dinv11155' => 'din', 'Dinv24969' => 'din', 'Dinv25056' => 'din', 'Dinv25057' => 'din', 'Dinv25672' => 'din', 'Dinv33357' => 'din', 'Dinv33358' => 'din', 'Dinv34212' => 'din', 'Duzib106G1382' => 'dzi', 'Duzib114G0258' => 'dzi', 'Duzib147G0751' => 'dzi', 'Duzib177G0475' => 'dzi', 'Duzib187G1426' => 'dzi', 'Duzib205G1570' => 'dzi', 'Duzib251G0482' => 'dzi', 'Duzib268G1236' => 'dzi', 'ECA232G2516' => 'eca', 'ECA232G3822' => 'eca', 'ECA232G4945' => 'eca', 'ECA233G3322' => 'eca', 'ECA234G3926' => 'eca', 'ECA238G4391' => 'eca', 'EL10Ac2g03202' => 'bvu', 'EL10Ac4g08763' => 'bvu', 'EL10Ac5g12875' => 'bvu', 'EL10Ac6g13165' => 'bvu', 'Eucgr.B00130' => 'egr', 'Eucgr.G02533' => 'egr', 'Eucgr.I01661' => 'egr', 'Eucgr.J00309' => 'egr', 'Eucgr.K01521' => 'egr', 'FAN01G2965' => 'fan', 'FAN02G2284' => 'fan', 'FAN03G1499' => 'fan', 'FAN04G1277' => 'fan', 'FAN05G1769' => 'fan', 'FAN06G2069' => 'fan', 'FAN07G0018' => 'fan', 'FAN08G1484' => 'fan', 'FAN09G3064' => 'fan', 'FAN10G3589' => 'fan', 'FAN12G2640' => 'fan', 'FAN13G2314' => 'fan', 'FAN14G5311' => 'fan', 'FAN17G1268' => 'fan', 'FAN18G0898' => 'fan', 'FAN19G2711' => 'fan', 'FAN22G1764' => 'fan', 'FAN23G0773' => 'fan', 'FAN26G2058' => 'fan', 'FAN26G2940' => 'fan', 'FvH4_1g28510' => 'fve', 'FvH4_4g31730' => 'fve', 'FvH4_5g07890' => 'fve', 'FvH4_6g52940' => 'fve', 'FvH4_6g53110' => 'fve', 'FvH4_7g05090' => 'fve', 'Glyma.01G043700' => 'gma', 'Glyma.02G019800' => 'gma', 'Glyma.04G194400' => 'gma', 'Glyma.04G194450' => 'gma', 'Glyma.05G075800' => 'gma', 'Glyma.06G171700' => 'gma', 'Glyma.08G229100' => 'gma', 'Glyma.08G297400' => 'gma', 'Glyma.12G170700' => 'gma', 'Glyma.15G215600' => 'gma', 'Glyma.16G037500' => 'gma', 'Glyma.16G059700' => 'gma', 'Glyma.17G187200' => 'gma', 'Glyma.18G124500' => 'gma', 'Glyma.19G074900' => 'gma', 'Glyma.19G087800' => 'gma', 'Glyma.19G115800' => 'gma', 'Gohir.A03G098700' => 'ghi', 'Gohir.A05G340000' => 'ghi', 'Gohir.A06G170500' => 'ghi', 'Gohir.A07G052100' => 'ghi', 'Gohir.A07G226600' => 'ghi', 'Gohir.A11G231000' => 'ghi', 'Gohir.A12G188500' => 'ghi', 'Gohir.A13G164000' => 'ghi', 'Gohir.D02G114600' => 'ghi', 'Gohir.D04G078500' => 'ghi', 'Gohir.D06G178300' => 'ghi', 'Gohir.D07G056600' => 'ghi', 'Gohir.D07G233800' => 'ghi', 'Gohir.D11G242300' => 'ghi', 'Gohir.D12G191100' => 'ghi', 'Gohir.D13G166900' => 'ghi', 'Gorai.001G060100' => 'gra', 'Gorai.001G269200' => 'gra', 'Gorai.005G139400' => 'gra', 'Gorai.007G256600' => 'gra', 'Gorai.008G205300' => 'gra', 'Gorai.012G088400' => 'gra', 'Gorai.013G195600' => 'gra', 'Gorai.N006900' => 'gra', 'GSVIVG01001815001' => 'vvi', 'GSVIVG01008509001' => 'vvi', 'GSVIVG01020055001' => 'vvi', 'GSVIVG01029950001' => 'vvi', 'GSVIVG01034604001' => 'vvi', 'HanXRQChr05g0149011' => 'han', 'HanXRQChr07g0198301' => 'han', 'HanXRQChr09g0273031' => 'han', 'HanXRQChr13g0398951' => 'han', 'HanXRQChr14g0429311' => 'han', 'HanXRQChr14g0439991' => 'han', 'HanXRQChr15g0486911' => 'han', 'HanXRQChr16g0497781' => 'han', 'Haze_03412' => 'cav', 'Haze_07239' => 'cav', 'Haze_12049' => 'cav', 'Haze_14843' => 'cav', 'Haze_20437' => 'cav', 'Hma1.2p1_0014F.1_g009680' => 'hma', 'Hma1.2p1_0104F.1_g050310' => 'hma', 'Hma1.2p1_0279F.1_g112570' => 'hma', 'Hma1.2p1_1039F.1_g250860' => 'hma', 'Hma1.2p1_2815F.1_g328930' => 'hma', 'HPP92_002809' => 'vpl', 'HPP92_002866' => 'vpl', 'HPP92_005180' => 'vpl', 'HPP92_009957' => 'vpl', 'HPP92_017660' => 'vpl', 'Hund02425' => 'sun', 'Hund06824' => 'sun', 'Hund15120' => 'sun', 'Hund25263' => 'sun', 'Lalb_Chr03g0032321' => 'lal', 'Lalb_Chr04g0256251' => 'lal', 'Lalb_Chr04g0256261' => 'lal', 'Lalb_Chr06g0174301' => 'lal', 'Lalb_Chr08g0237061' => 'lal', 'Lalb_Chr14g0364751' => 'lal', 'Lalb_Chr16g0392591' => 'lal', 'Lalb_Chr21g0317281' => 'lal', 'Lalb_Chr22g0358821' => 'lal', 'Lj1g0008027' => 'lja', 'Lj1g0015411' => 'lja', 'Lj1g0028170' => 'lja', 'Lj2g0017679' => 'lja', 'Lj3g0021973' => 'lja', 'Lj4C230G16' => 'lonja', 'Lj4C230T15' => 'lonja', 'Lj4g0011521' => 'lja', 'Lj6A793T93' => 'lonja', 'Lj7C609G18' => 'lonja', 'Lj7C609T18' => 'lonja', 'Lj9A477T53' => 'lonja', 'Lju41C50T13' => 'lonja', 'Lsat_1_v5_gn_2_94020' => 'lsa', 'Lsat_1_v5_gn_4_185381' => 'lsa', 'Lsat_1_v5_gn_4_76660' => 'lsa', 'Lsat_1_v5_gn_4_8760' => 'lsa', 'Lsat_1_v5_gn_6_31581' => 'lsa', 'Lsat_1_v5_gn_6_97601' => 'lsa', 'Manes.05G098100' => 'mes', 'Manes.06G118000' => 'mes', 'Manes.09G137500' => 'mes', 'Manes.10G070700' => 'mes', 'Manes.14G053100' => 'mes', 'Manes.15G158700' => 'mes', 'Manes.17G105400' => 'mes', 'Mapoly0146s0009' => 'mpo', 'MBI01_g12911_MAGBIO' => 'mbi', 'MBI05_g12104_MAGBIO' => 'mbi', 'MBI08_g29458_MAGBIO' => 'mbi', 'MBI08_g37187_MAGBIO' => 'mbi', 'MD02G1262400' => 'mdo', 'MD06G1145000' => 'mdo', 'MD07G1057800' => 'mdo', 'MD09G1014600' => 'mdo', 'MD12G1009300' => 'mdo', 'MD13G1077200' => 'mdo', 'MD14G1006700' => 'mdo', 'MD14G1159600' => 'mdo', 'MD16G1077300' => 'mdo', 'MD17G1014600' => 'mdo', 'Medtr3g088930' => 'mtr', 'Medtr3g088960' => 'mtr', 'Medtr4g117820' => 'mtr', 'Medtr5g038600' => 'mtr', 'Medtr5g039800' => 'mtr', 'Medtr6g023390' => 'mtr', 'Medtr6g027720' => 'mtr', 'Medtr7g031470' => 'mtr', 'Medtr7g086420' => 'mtr', 'Medtr8g044230' => 'mtr', 'Medtr8g468500' => 'mtr', 'MELO3C002351.2' => 'cme', 'MELO3C008207.2' => 'cme', 'MELO3C008838.2' => 'cme', 'MELO3C012075.2' => 'cme', 'MELO3C019919.2' => 'cme', 'Migut.B01134' => 'egut', 'Migut.H00009' => 'egut', 'Migut.I00514' => 'egut', 'Migut.J00774' => 'egut', 'Migut.L01330' => 'egut', 'MSTRG.11285' => 'ama', 'MSTRG.19358' => 'ama', 'MSTRG.20473' => 'ama', 'MSTRG.24083' => 'ama', 'MSTRG.3090' => 'ama', 'MSTRG.678' => 'ama', 'MSTRG.7820' => 'ama', 'Nitab4.5_0000040g0430' => 'nta', 'Nitab4.5_0000879g0030' => 'nta', 'Nitab4.5_0001611g0010' => 'nta', 'Nitab4.5_0001623g0040' => 'nta', 'Nitab4.5_0002887g0080' => 'nta', 'Nitab4.5_0002911g0030' => 'nta', 'Nitab4.5_0004014g0060' => 'nta', 'Nitab4.5_0004148g0020' => 'nta', 'Nitab4.5_0006585g0030' => 'nta', 'Nitab4.5_0007150g0010' => 'nta', 'Nitab4.5_0007830g0010' => 'nta', 'Nitab4.5_0028670g0010' => 'nta', 'Nn2g14527' => 'nnu', 'Nn3g16521' => 'nnu', 'Nn3g17152' => 'nnu', 'Nn4g22383' => 'nnu', 'Nn4g23076' => 'nnu', 'Oeu001588.1' => 'oeu', 'Oeu006362.1' => 'oeu', 'Oeu011953.1' => 'oeu', 'Oeu012384.1' => 'oeu', 'Oeu028698.1' => 'oeu', 'Oeu043897.1' => 'oeu', 'Oeu056006.2' => 'oeu', 'Oeu058674.1' => 'oeu', 'Oeu058675.1' => 'oeu', 'Oeu058771.1' => 'oeu', 'Os06g0589600' => 'osa', 'Os07g0166700' => 'osa', 'Os11g0308800' => 'osa', 'Peaxi162Scf00045g00143' => 'pax', 'Peaxi162Scf00209g00220' => 'pax', 'Peaxi162Scf00420g00447' => 'pax', 'Peaxi162Scf00575g00047' => 'pax', 'Peaxi162Scf00647g00318' => 'pax', 'Peaxi162Scf00881g00225' => 'pax', 'PGR044G0609' => 'pgr', 'PGR119G0763' => 'pgr', 'PGR142G2204' => 'pgr', 'PGR142G2657' => 'pgr', 'PGSC0003DMG400006923' => 'stu', 'PGSC0003DMG400017645' => 'stu', 'PGSC0003DMG400027499' => 'stu', 'PGSC0003DMG400028212' => 'stu', 'PGSC0003DMG401017953' => 'stu', 'PGSC0003DMG402017953' => 'stu', 'PGSC0003DMG402020263' => 'stu', 'Phvul.001G115100' => 'pvu', 'Phvul.002G089300' => 'pvu', 'Phvul.003G068400' => 'pvu', 'Phvul.004G055400' => 'pvu', 'Phvul.004G072600' => 'pvu', 'Phvul.009G167600' => 'pvu', 'Phvul.011G185500' => 'pvu', 'Potri.001G147700' => 'ptr', 'Potri.001G333300' => 'ptr', 'Potri.008G014300' => 'ptr', 'Potri.012G095600' => 'ptr', 'Potri.013G064300' => 'ptr', 'Potri.015G093100' => 'ptr', 'Potri.019G039000' => 'ptr', 'Prupe.1G269800' => 'ppe', 'Prupe.2G063900' => 'ppe', 'Prupe.3G303100' => 'ppe', 'Prupe.5G153400' => 'ppe', 'Prupe.7G011100' => 'ppe', 'Psat1g084920' => 'psa', 'Psat1g090000' => 'psa', 'Psat2g123320' => 'psa', 'Psat3g087400' => 'psa', 'Psat3g181840' => 'psa', 'Psat4g133280' => 'psa', 'Psat4g143080' => 'psa', 'Psat5g139760' => 'psa', 'PSO017G0129' => 'pso', 'PSO063G4110' => 'pso', 'PSO063G5595' => 'pso', 'PSO339G1175' => 'pso', 'PSO591G0331' => 'pso', 'PSO782G4599' => 'pso', 'PSO832G2167' => 'pso', 'QL02p071931' => 'qlo', 'QL03p065408' => 'qlo', 'QL04p050237' => 'qlo', 'QL05p062158' => 'qlo', 'QL05p062209' => 'qlo', 'QL07p017592' => 'qlo', 'QL10p004236' => 'qlo', 'QL10p004249' => 'qlo', 'RcHm_v2.0_Chr1g0331461' => 'rch', 'RcHm_v2.0_Chr2g0106381' => 'rch', 'RcHm_v2.0_Chr2g0174981' => 'rch', 'RcHm_v2.0_Chr3g0496251' => 'rch', 'RcHm_v2.0_Chr4g0440331' => 'rch', 'RcHm_v2.0_Chr7g0184901' => 'rch', 'RcHm_v2.0_Chr7g0184911' => 'rch', 'RcHm_v2.0_Chr7g0184921' => 'rch', 'RcHm_v2.0_Chr7g0190561' => 'rch', 'Rhsim03G0050600' => 'rsi', 'Rhsim04G0167700' => 'rsi', 'Rhsim08G0188300' => 'rsi', 'Rhsim10G0008500' => 'rsi', 'Rhsim12G0130900' => 'rsi', 'Sabra01G0116100' => 'sbr', 'Sabra01G0117400' => 'sbr', 'Sabra08G0008900' => 'sbr', 'Sabra12G0070100' => 'sbr', 'Sabra13G0056300' => 'sbr', 'Sabra15G0114700' => 'sbr', 'Sabra16G0214600' => 'sbr', 'Sabra19G0049900' => 'sbr', 'SalBow1G5400' => 'sbo', 'SalBow1G7274' => 'sbo', 'SalBow2G1549' => 'sbo', 'SalBow2G2500' => 'sbo', 'SalBow3G0474' => 'sbo', 'SalBow4G0484' => 'sbo', 'SalBow4G3233' => 'sbo', 'SalBow8G0160' => 'sbo', 'Sc03g0006710' => 'sci', 'Sc04g0008380' => 'sci', 'Sc07g0007820' => 'sci', 'Sc20g0001050' => 'sci', 'Sed0004765' => 'sed', 'Sed0007643' => 'sed', 'Sed0008364' => 'sed', 'Sed0010858' => 'sed', 'Sed0018303' => 'sed', 'Sed0020987' => 'sed', 'Sed0022295' => 'sed', 'SEGI_02802' => 'sgi', 'SEGI_05526' => 'sgi', 'SEGI_10699' => 'sgi', 'SGA_v2.0_scaffold112G31635' => 'sas', 'SGA_v2.0_scaffold161G37780' => 'sas', 'SGA_v2.0_scaffold164G38160' => 'sas', 'SGA_v2.0_scaffold18G08216' => 'sas', 'SGA_v2.0_scaffold290G47294' => 'sas', 'SGA_v2.0_scaffold88G27211' => 'sas', 'Solyc01g068360.4' => 'sly', 'Solyc01g096940.4' => 'sly', 'Solyc02g068060.3' => 'sly', 'Solyc02g093970.4' => 'sly', 'Solyc05g007120.4' => 'sly', 'Solyc10g081420.2' => 'sly', 'Sopen01g030320' => 'spe', 'Sopen01g040650' => 'spe', 'Sopen02g017170' => 'spe', 'Sopen02g038620' => 'spe', 'Sopen05g003080' => 'spe', 'Sopen10g031920' => 'spe', 'Sp1g12760' => 'spa', 'Sp2g13880' => 'spa', 'Sp2g26500' => 'spa', 'Sp3g02740' => 'spa', 'Sp6g29820' => 'spa', 'SpUn0049_0010' => 'spa', 'TAR374G1469' => 'tar', 'TAR622G0686' => 'tar', 'TAR623G0746' => 'tar', 'TAR629G2216' => 'tar', 'TAR629G3153' => 'tar', 'THA.LOC104798950' => 'tha', 'THA.LOC104801787' => 'tha', 'THA.LOC104802379' => 'tha', 'THA.LOC104802879' => 'tha', 'THA.LOC104820788' => 'tha', 'Thecc.02G353400' => 'tca', 'Thecc.03G126300' => 'tca', 'Thecc.04G030900' => 'tca', 'Thecc.05G243700' => 'tca', 'Thecc.10G126000' => 'tca', 'Thhalv10003702m.g' => 'esa', 'Thhalv10003757m.g' => 'esa', 'Thhalv10006929m.g' => 'esa', 'Thhalv10012902m.g' => 'esa', 'Thhalv10020088m.g' => 'esa', 'TPR.G13769' => 'tpr', 'TPR.G14614' => 'tpr', 'TPR.G17859' => 'tpr', 'TPR.G26143' => 'tpr', 'TPR.G29659' => 'tpr', 'TPR.G29660' => 'tpr', 'TPR.G33249' => 'tpr', 'TPR.G35640' => 'tpr', 'TPR.G38281' => 'tpr', 'TPR.G7532' => 'tpr', 'TPR.G7708' => 'tpr', 'TWI14G1224' => 'twi', 'TWI18G0025' => 'twi', 'TWI38G1502' => 'twi', 'TWI39G0293' => 'twi', 'TWI56G1208' => 'twi', 'TWI60G1256' => 'twi', 'unitig_747.g21170' => 'ugi', 'unitig_8.g2948' => 'ugi', 'unitig_8.g2949' => 'ugi', 'vmacro05940' => 'vma', 'vmacro07668' => 'vma', 'vmacro08593' => 'vma', 'vmacro16335' => 'vma', 'vmacro19216' => 'vma', 'VMungo0251G1587' => 'vmu', 'VMungo0464G0029' => 'vmu', 'VMungo0464G1970' => 'vmu', 'VMungo1127G1168' => 'vmu', 'VMungo1309G2456' => 'vmu', 'VMungo1383G0227' => 'vmu', 'Zm00001eb060390' => 'zma', 'Zm00001eb167780' => 'zma', 'Zm00001eb300880' => 'zma', 'Zm00001eb386180' => 'zma', 'Zm00001eb421000' => 'zma' ) $gf_id = 'HOM05D000940' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000940' ) $data_identifier = 'HOM05D000940' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421000' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1